Index

_

__init__() (api.admin.ConceptDB method), [1], [2] (api.admin.MedCATLoadException method), [1] (api.metrics.ProjectMetrics method) (api.models.ConceptDB method) (api.models.MedCATLoadException method) (api.utils.RemoteEntity method) (api.utils.RemoteSpacyDoc method) (api.utils.SimpleFilters method) __str__() (api.admin.AnnotatedEntity method), [1], [2] (api.admin.ConceptDB method), [1], [2] (api.admin.Dataset method), [1] (api.admin.Document method), [1], [2] (api.admin.Entity method), [1] (api.admin.EntityRelation method), [1], [2] (api.admin.ExportedProject method), [1] (api.admin.MetaAnnotation method), [1], [2] (api.admin.MetaCATModel method), [1] (api.admin.MetaTask method), [1] (api.admin.MetaTaskValue method), [1] (api.admin.ModelPack method), [1] (api.admin.Project method), [1] (api.admin.ProjectGroup method), [1] (api.admin.ProjectMetrics method), [1] (api.admin.Relation method), [1] (api.admin.Vocabulary method), [1] (api.models.AnnotatedEntity method) (api.models.ConceptDB method) (api.models.Dataset method) (api.models.Document method) (api.models.Entity method) (api.models.EntityRelation method) (api.models.ExportedProject method) (api.models.MetaAnnotation method) (api.models.MetaCATModel method) (api.models.MetaTask method) (api.models.MetaTaskValue method) (api.models.ModelPack method) (api.models.Project method) (api.models.ProjectGroup method) (api.models.ProjectMetrics method) (api.models.Relation method) (api.models.Vocabulary method)

_annotations() (api.metrics.ProjectMetrics method) _cache_solr_collection_schema_types() (in module api.solr_utils) _clear_models() (in module api.model_cache) _concept_dct() (in module api.solr_utils) _dt_fmt (in module api.admin), [1] (in module api.admin.actions) (in module api.data_utils) (in module api.metrics) _eval() (api.metrics.ProjectMetrics method) _eval_model() (api.metrics.ProjectMetrics method) _MAX_DATASET_SIZE_DEFAULT (in module api.data_utils) _MAX_MODELS_LOADED (in module api.model_cache) _parse_config_file() (in module api.model_cache) _patch_media_root() (api.tests.test_data_utils.UploadProjectsExportTestCase method) _process_result_repsonse() (in module api.solr_utils) _PROJECT_ANNO_ENTS_SETTINGS_FIELD_ORDER (in module api.admin) (in module api.admin.models) _PROJECT_FIELDS_ORDER (in module api.admin) (in module api.admin.models) _remove_file() (in module api.admin), [1] (in module api.models) _reset_cdb_filters() (in module api.admin), [1] (in module api.admin.actions) _restore_media_root() (api.tests.test_data_utils.UploadProjectsExportTestCase method) _set_proj_from_group() (api.admin.models.ProjectGroupAdmin method) (api.admin.ProjectGroupAdmin method) _set_value_or_alt() (in module api.model_cache) _solr_error_response() (in module api.solr_utils) _submit_document() (in module api.views) _upload_payload() (in module api.solr_utils)

A

abstract (api.admin.ProjectAnnotateEntitiesFields.Meta attribute), [1] (api.admin.ProjectFields.Meta attribute), [1] (api.models.ProjectAnnotateEntitiesFields.Meta attribute) (api.models.ProjectFields.Meta attribute) acc (api.admin.AnnotatedEntity attribute), [1], [2] (api.admin.MetaAnnotation attribute), [1], [2] (api.models.AnnotatedEntity attribute) (api.models.MetaAnnotation attribute) actions (api.admin.ConceptDBAdmin attribute) (api.admin.DocumentAdmin attribute) (api.admin.models.ConceptDBAdmin attribute) (api.admin.models.DocumentAdmin attribute) (api.admin.models.ProjectAnnotateEntitiesAdmin attribute) (api.admin.ProjectAnnotateEntitiesAdmin attribute) add_annotation() (in module api.views) add_annotations() (in module api.utils) add_concept() (in module api.views) add_new_entities (api.admin.ProjectAnnotateEntitiesFields attribute), [1] (api.models.ProjectAnnotateEntitiesFields attribute) administrators (api.admin.ProjectGroup attribute), [1] (api.models.ProjectGroup attribute) alternative (api.admin.AnnotatedEntity attribute), [1], [2] (api.models.AnnotatedEntity attribute) annotate_text() (in module api.views) annotated_entity (api.admin.MetaAnnotation attribute), [1], [2] (api.models.MetaAnnotation attribute) AnnotatedEntity (class in api.admin), [1], [2] (class in api.models) AnnotatedEntity.Meta (class in api.admin), [1], [2] (class in api.models) AnnotatedEntityAdmin (class in api.admin) (class in api.admin.models) AnnotatedEntityFilter (class in api.views) AnnotatedEntityFilter.Meta (class in api.views) AnnotatedEntitySerializer (class in api.serializers) AnnotatedEntitySerializer.Meta (class in api.serializers) AnnotatedEntityViewSet (class in api.views) annotation_classification (api.admin.ProjectFields attribute), [1] (api.models.ProjectFields attribute) annotation_df() (api.metrics.ProjectMetrics method) annotation_guideline_link (api.admin.ProjectFields attribute), [1] (api.models.ProjectFields attribute) annotators (api.admin.ProjectGroup attribute), [1] (api.models.ProjectGroup attribute)

api module api.admin module api.admin.actions module api.admin.models module api.apps module api.data_utils module api.metrics module api.model_cache module api.models module api.oidc_utils module api.permissions module api.serializers module api.signals module api.solr_utils module api.tests module api.tests.test_data_utils module api.urls module api.utils module api.views module ApiConfig (class in api.apps) auto_delete_cdb_file_on_delete() (in module api.admin), [1] (in module api.models) auto_delete_dataset_file_on_delete() (in module api.admin), [1] (in module api.models) auto_delete_vocab_file_on_delete() (in module api.admin), [1] (in module api.models)

B

behind_reverse_proxy() (in module api.views)

BOOL_CHOICES (in module api.admin), [1] (in module api.models)

C

cache_modelpack() (in module api.views) cache_project_model() (in module api.views) calculate_metrics() (in module api.metrics) call_remote_model_service() (in module api.utils) cat (in module api.views) CAT_MAP (in module api.model_cache) cdb_concept_path() (in module api.views) cdb_cui_children() (in module api.views) cdb_file (api.admin.ConceptDB attribute), [1], [2] (api.models.ConceptDB attribute) cdb_id (api.admin.ExportedProject attribute), [1] (api.models.ExportedProject attribute) CDB_MAP (in module api.model_cache) cdb_name_validator (in module api.admin), [1] (in module api.models) cdb_search_filter (api.admin.ProjectAnnotateEntitiesFields attribute), [1] (api.admin.ProjectGroup attribute), [1] (api.models.ProjectAnnotateEntitiesFields attribute) (api.models.ProjectGroup attribute) cdb_search_filter_id (api.admin.ExportedProject attribute), [1] (api.models.ExportedProject attribute) changeform_view() (api.admin.models.ReportErrorModelAdminMixin method) (api.admin.ReportErrorModelAdminMixin method) clean() (api.admin.DatasetForm method), [1] (api.models.DatasetForm method) clear_cached_cdb() (in module api.model_cache) clear_cached_medcat() (in module api.model_cache) clear_cached_medcat_by_model_pack_id() (in module api.model_cache) clear_cached_vocab() (in module api.model_cache) clear_cdb_cnf_addons() (in module api.admin), [1] (in module api.utils) clone_projects() (in module api.admin), [1] (in module api.admin.actions) collections_available() (in module api.solr_utils) comment (api.admin.AnnotatedEntity attribute), [1], [2] (api.models.AnnotatedEntity attribute) concept_db (api.admin.ModelPack attribute), [1] (api.admin.ProjectAnnotateEntitiesFields attribute), [1] (api.models.ModelPack attribute) (api.models.ProjectAnnotateEntitiesFields attribute)

concept_search_index_available() (in module api.views) concept_summary() (api.metrics.ProjectMetrics method) ConceptDB (class in api.admin), [1], [2] (class in api.models) ConceptDBAdmin (class in api.admin) (class in api.admin.models) ConceptDBSerializer (class in api.serializers) ConceptDBSerializer.Meta (class in api.serializers) ConceptDBViewSet (class in api.views) correct (api.admin.AnnotatedEntity attribute), [1], [2] (api.models.AnnotatedEntity attribute) create_annotation() (in module api.utils) create_associated_projects (api.admin.ProjectGroup attribute), [1] (api.models.ProjectGroup attribute) create_dataset() (in module api.views) create_time (api.admin.AnnotatedEntity attribute), [1], [2] (api.admin.ConceptDB attribute), [1], [2] (api.admin.Dataset attribute), [1] (api.admin.Document attribute), [1], [2] (api.admin.EntityRelation attribute), [1], [2] (api.admin.ModelPack attribute), [1] (api.admin.ProjectFields attribute), [1] (api.admin.Vocabulary attribute), [1] (api.models.AnnotatedEntity attribute) (api.models.ConceptDB attribute) (api.models.Dataset attribute) (api.models.Document attribute) (api.models.EntityRelation attribute) (api.models.ModelPack attribute) (api.models.ProjectFields attribute) (api.models.Vocabulary attribute) cuis (api.admin.ProjectFields attribute), [1] (api.models.ProjectFields attribute) cuis_file (api.admin.ProjectFields attribute), [1] (api.models.ProjectFields attribute) (api.serializers.ProjectAnnotateEntitiesSerializer attribute) cuis_to_concepts() (in module api.views)

D

dataset (api.admin.Document attribute), [1], [2] (api.admin.ProjectFields attribute), [1] (api.models.Document attribute) (api.models.ProjectFields attribute) Dataset (class in api.admin), [1] (class in api.models) dataset_document_counts() (in module api.admin), [1] (in module api.admin.actions) dataset_from_file() (in module api.data_utils) DatasetAdmin (class in api.admin) (class in api.admin.models) DatasetForm (class in api.admin), [1] (class in api.models) DatasetSerializer (class in api.serializers) DatasetSerializer.Meta (class in api.serializers) DatasetViewSet (class in api.views) default (api.admin.MetaTask attribute), [1] (api.models.MetaTask attribute) default_app_config (in module api) deid_model_annotation (api.admin.ProjectAnnotateEntitiesFields attribute), [1] (api.models.ProjectAnnotateEntitiesFields attribute) delete_indexed_concepts() (in module api.admin), [1] (in module api.admin.actions) delete_orphan_docs() (in module api.data_utils) deleted (api.admin.AnnotatedEntity attribute), [1], [2] (api.models.AnnotatedEntity attribute) description (api.admin.Dataset attribute), [1] (api.admin.MetaTask attribute), [1] (api.admin.ProjectFields attribute), [1] (api.models.Dataset attribute) (api.models.MetaTask attribute) (api.models.ProjectFields attribute)

document (api.admin.AnnotatedEntity attribute), [1], [2] (api.admin.EntityRelation attribute), [1], [2] (api.models.AnnotatedEntity attribute) (api.models.EntityRelation attribute) Document (class in api.admin), [1], [2] (class in api.models) Document.Meta (class in api.admin), [1], [2] (class in api.models) DocumentAdmin (class in api.admin) (class in api.admin.models) DocumentSerializer (class in api.serializers) DocumentSerializer.Meta (class in api.serializers) DocumentViewSet (class in api.views) download() (in module api.admin), [1] (in module api.admin.actions) download_annos() (in module api.views) download_projects_with_text() (in module api.admin), [1] (in module api.admin.actions) download_projects_without_text() (in module api.admin), [1] (in module api.admin.actions) download_without_text() (in module api.admin), [1] (in module api.admin.actions) download_without_text_with_doc_names() (in module api.admin), [1] (in module api.admin.actions) drop_collection() (in module api.admin), [1] (in module api.solr_utils)

E

email_template_name (api.views.ResetPasswordView attribute), [1] enable_entity_annotation_comments (api.admin.ProjectAnnotateEntitiesFields attribute), [1] (api.models.ProjectAnnotateEntitiesFields attribute) end_entity (api.admin.EntityRelation attribute), [1], [2] (api.models.EntityRelation attribute) end_ind (api.admin.AnnotatedEntity attribute), [1], [2] (api.models.AnnotatedEntity attribute) enrich_medcat_metrics() (api.metrics.ProjectMetrics method) ensure_concept_searchable() (in module api.solr_utils) entity (api.admin.AnnotatedEntity attribute), [1], [2] (api.models.AnnotatedEntity attribute) Entity (class in api.admin), [1] (class in api.models) EntityRelation (class in api.admin), [1], [2] (class in api.models)

EntityRelation.Meta (class in api.admin), [1], [2] (class in api.models) EntityRelationSerializer (class in api.serializers) EntityRelationSerializer.Meta (class in api.serializers) EntityRelationViewSet (class in api.views) EntitySerializer (class in api.serializers) EntitySerializer.Meta (class in api.serializers) EntityViewSet (class in api.views) env_str_to_bool() (in module api.utils) ExportedProject (class in api.admin), [1] (class in api.models) ExportedProjectAdmin (class in api.admin) (class in api.admin.models)

F

fields (api.admin.ConceptDBAdmin attribute) (api.admin.ModelPackAdmin attribute) (api.admin.models.ConceptDBAdmin attribute) (api.admin.models.ModelPackAdmin attribute) (api.admin.models.ProjectAnnotateEntitiesAdmin attribute) (api.admin.models.ProjectGroupAdmin attribute) (api.admin.models.VocabularyAdmin attribute) (api.admin.ProjectAnnotateEntitiesAdmin attribute) (api.admin.ProjectGroupAdmin attribute) (api.admin.VocabularyAdmin attribute) (api.serializers.AnnotatedEntitySerializer.Meta attribute) (api.serializers.ConceptDBSerializer.Meta attribute) (api.serializers.DatasetSerializer.Meta attribute) (api.serializers.DocumentSerializer.Meta attribute) (api.serializers.EntityRelationSerializer.Meta attribute) (api.serializers.EntitySerializer.Meta attribute) (api.serializers.MetaAnnotationSerializer.Meta attribute) (api.serializers.MetaCATModelSerializer.Meta attribute) (api.serializers.MetaTaskSerializer.Meta attribute) (api.serializers.MetaTaskValueSerializer.Meta attribute) (api.serializers.ModelPackSerializer.Meta attribute) (api.serializers.ProjectAnnotateEntitiesSerializer.Meta attribute) (api.serializers.ProjectGroupSerializer.Meta attribute) (api.serializers.RelationSerializer.Meta attribute) (api.serializers.UserSerializer.Meta attribute) (api.serializers.VocabularySerializer.Meta attribute) (api.views.AnnotatedEntityFilter.Meta attribute) (api.views.ProjectGroupFilter.Meta attribute) (api.views.RelationFilter.Meta attribute)

filterset_class (api.views.AnnotatedEntityViewSet attribute) (api.views.ProjectGroupViewSet attribute) (api.views.RelationViewSet attribute) filterset_fields (api.views.DocumentViewSet attribute) (api.views.EntityRelationViewSet attribute) (api.views.MetaAnnotationViewSet attribute) (api.views.ProjectAnnotateEntitiesViewSet attribute) (api.views.ProjectGroupViewSet attribute) (api.views.UserViewSet attribute) form (api.admin.DatasetAdmin attribute) (api.admin.models.DatasetAdmin attribute) formfield_for_foreignkey() (api.admin.models.ProjectAnnotateEntitiesAdmin method) (api.admin.ProjectAnnotateEntitiesAdmin method) formfield_for_manytomany() (api.admin.models.ProjectAnnotateEntitiesAdmin method) (api.admin.ProjectAnnotateEntitiesAdmin method) from_db() (api.admin.ConceptDB class method), [1], [2] (api.models.ConceptDB class method) full_annotation_df() (api.metrics.ProjectMetrics method)

G

generate_concept_filter() (in module api.views) generate_concept_filter_flat_json() (in module api.views) generate_report() (api.metrics.ProjectMetrics method) get_addon_data() (api.utils.RemoteEntity method) get_anno_tool_conf() (in module api.views) get_cached_cdb() (in module api.model_cache) get_cached_medcat() (in module api.model_cache) get_create_cdb_infos() (in module api.utils) get_create_entity() (in module api.views) get_form() (api.admin.models.ProjectGroupAdmin method) (api.admin.ProjectGroupAdmin method)

get_medcat() (in module api.model_cache) get_medcat_from_cdb_vocab() (in module api.model_cache) get_medcat_from_model_pack() (in module api.model_cache) get_medcat_from_model_pack_id() (in module api.model_cache) get_or_create_meta_tasks_and_values() (api.admin.MetaCATModel method), [1] (api.models.MetaCATModel method) get_queryset() (api.views.ProjectAnnotateEntitiesViewSet method) get_user_by_email() (in module api.oidc_utils) group (api.admin.Project attribute), [1] (api.models.Project attribute)

H

has_permission() (api.permissions.IsReadOnly method) http_method_names (api.views.ConceptDBViewSet attribute) (api.views.DatasetViewSet attribute) (api.views.EntityRelationViewSet attribute) (api.views.EntityViewSet attribute) (api.views.MetaAnnotationViewSet attribute) (api.views.MetaTaskValueViewSet attribute) (api.views.MetaTaskViewSet attribute) (api.views.ModelPackViewSet attribute) (api.views.ProjectAnnotateEntitiesViewSet attribute) (api.views.RelationViewSet attribute) (api.views.UserViewSet attribute) (api.views.VocabularyViewSet attribute)

I

id__in (api.views.AnnotatedEntityFilter attribute) (api.views.ProjectGroupFilter attribute) (api.views.RelationFilter attribute) import_all_concepts() (in module api.admin), [1] (in module api.solr_utils) import_cdb_concepts() (in module api.views) import_concepts() (in module api.admin), [1] (in module api.admin.actions) import_concepts_from_cdb() (in module api.admin), [1] (in module api.admin.actions) import_project_name_suffix (api.admin.ExportedProject attribute), [1] (api.models.ExportedProject attribute)

index() (in module api.views) InvalidParameterError irrelevant (api.admin.AnnotatedEntity attribute), [1], [2] (api.models.AnnotatedEntity attribute) irrelevant_available (api.admin.ProjectAnnotateEntitiesFields attribute), [1] (api.models.ProjectAnnotateEntitiesFields attribute) is_model_loaded() (in module api.model_cache) is_model_pack_loaded() (in module api.model_cache) is_project_admin() (in module api.permissions) IsReadOnly (class in api.permissions)

K

killed (api.admin.AnnotatedEntity attribute), [1], [2] (api.models.AnnotatedEntity attribute)

L

label (api.admin.Entity attribute), [1] (api.admin.Relation attribute), [1] (api.models.Entity attribute) (api.models.Relation attribute) last_modified (api.admin.AnnotatedEntity attribute), [1], [2] (api.admin.ConceptDB attribute), [1], [2] (api.admin.Document attribute), [1], [2] (api.admin.EntityRelation attribute), [1], [2] (api.admin.MetaAnnotation attribute), [1], [2] (api.admin.ModelPack attribute), [1] (api.admin.ProjectFields attribute), [1] (api.admin.Vocabulary attribute), [1] (api.models.AnnotatedEntity attribute) (api.models.ConceptDB attribute) (api.models.Document attribute) (api.models.EntityRelation attribute) (api.models.MetaAnnotation attribute) (api.models.ModelPack attribute) (api.models.ProjectFields attribute) (api.models.Vocabulary attribute) last_modified_by (api.admin.ConceptDB attribute), [1], [2] (api.admin.ModelPack attribute), [1] (api.admin.Vocabulary attribute), [1] (api.models.ConceptDB attribute) (api.models.ModelPack attribute) (api.models.Vocabulary attribute) list_display (api.admin.AnnotatedEntityAdmin attribute) (api.admin.ConceptDBAdmin attribute) (api.admin.DatasetAdmin attribute) (api.admin.DocumentAdmin attribute) (api.admin.MetaAnnotationAdmin attribute) (api.admin.MetaCATModelAdmin attribute) (api.admin.ModelPackAdmin attribute) (api.admin.models.AnnotatedEntityAdmin attribute) (api.admin.models.ConceptDBAdmin attribute) (api.admin.models.DatasetAdmin attribute) (api.admin.models.DocumentAdmin attribute) (api.admin.models.MetaAnnotationAdmin attribute) (api.admin.models.MetaCATModelAdmin attribute) (api.admin.models.ModelPackAdmin attribute) (api.admin.models.ProjectAnnotateEntitiesAdmin attribute) (api.admin.models.ProjectGroupAdmin attribute) (api.admin.models.ProjectMetricsAdmin attribute) (api.admin.models.VocabularyAdmin attribute) (api.admin.ProjectAnnotateEntitiesAdmin attribute) (api.admin.ProjectGroupAdmin attribute) (api.admin.ProjectMetricsAdmin attribute) (api.admin.VocabularyAdmin attribute)

list_filter (api.admin.AnnotatedEntityAdmin attribute) (api.admin.DocumentAdmin attribute) (api.admin.MetaAnnotationAdmin attribute) (api.admin.models.AnnotatedEntityAdmin attribute) (api.admin.models.DocumentAdmin attribute) (api.admin.models.MetaAnnotationAdmin attribute) (api.admin.models.ProjectAnnotateEntitiesAdmin attribute) (api.admin.models.ProjectMetricsAdmin attribute) (api.admin.ProjectAnnotateEntitiesAdmin attribute) (api.admin.ProjectMetricsAdmin attribute) logger (in module api.admin), [1], [2] (in module api.admin.actions) (in module api.apps) (in module api.data_utils) (in module api.metrics) (in module api.model_cache) (in module api.models) (in module api.serializers) (in module api.signals) (in module api.solr_utils) (in module api.utils) (in module api.views), [1]

M

manually_created (api.admin.AnnotatedEntity attribute), [1], [2] (api.models.AnnotatedEntity attribute) MedCATLoadException, [1], [2] members (api.admin.ExportedProject attribute), [1] (api.admin.Project attribute), [1] (api.models.ExportedProject attribute) (api.models.Project attribute) meta_anns_concept_summary() (api.metrics.ProjectMetrics method) meta_cat_dir (api.admin.MetaCATModel attribute), [1] (api.models.MetaCATModel attribute) meta_cat_predictions (api.admin.ProjectFields attribute), [1] (api.models.ProjectFields attribute) meta_cats (api.admin.ModelPack attribute), [1] (api.models.ModelPack attribute) meta_task (api.admin.MetaAnnotation attribute), [1], [2] (api.models.MetaAnnotation attribute) meta_task_value (api.admin.MetaAnnotation attribute), [1], [2] (api.models.MetaAnnotation attribute) MetaAnnotation (class in api.admin), [1], [2] (class in api.models) MetaAnnotationAdmin (class in api.admin) (class in api.admin.models) MetaAnnotationSerializer (class in api.serializers) MetaAnnotationSerializer.Meta (class in api.serializers) MetaAnnotationViewSet (class in api.views) MetaCATModel (class in api.admin), [1] (class in api.models) MetaCATModelAdmin (class in api.admin) (class in api.admin.models) MetaCATModelSerializer (class in api.serializers) MetaCATModelSerializer.Meta (class in api.serializers) metacats() (api.admin.ModelPackAdmin method) (api.admin.models.ModelPackAdmin method) MetaTask (class in api.admin), [1] (class in api.models) MetaTask.Meta (class in api.admin), [1] (class in api.models) MetaTaskSerializer (class in api.serializers) MetaTaskSerializer.Meta (class in api.serializers) MetaTaskValue (class in api.admin), [1] (class in api.models) MetaTaskValue.Meta (class in api.admin), [1] (class in api.models) MetaTaskValueSerializer (class in api.serializers) MetaTaskValueSerializer.Meta (class in api.serializers) MetaTaskValueViewSet (class in api.views) MetaTaskViewSet (class in api.views) metrics_jobs() (in module api.views) model (api.admin.AnnotatedEntityAdmin attribute) (api.admin.ConceptDBAdmin attribute) (api.admin.DatasetAdmin attribute) (api.admin.DocumentAdmin attribute) (api.admin.ExportedProjectAdmin attribute) (api.admin.MetaAnnotationAdmin attribute) (api.admin.MetaCATModelAdmin attribute) (api.admin.ModelPackAdmin attribute) (api.admin.models.AnnotatedEntityAdmin attribute) (api.admin.models.ConceptDBAdmin attribute) (api.admin.models.DatasetAdmin attribute) (api.admin.models.DocumentAdmin attribute) (api.admin.models.ExportedProjectAdmin attribute) (api.admin.models.MetaAnnotationAdmin attribute) (api.admin.models.MetaCATModelAdmin attribute) (api.admin.models.ModelPackAdmin attribute) (api.admin.models.ProjectAnnotateEntitiesAdmin attribute) (api.admin.models.ProjectGroupAdmin attribute) (api.admin.models.ProjectGroupAdmin.Meta attribute) (api.admin.models.ProjectMetricsAdmin attribute) (api.admin.models.VocabularyAdmin attribute) (api.admin.ProjectAnnotateEntitiesAdmin attribute) (api.admin.ProjectGroupAdmin attribute) (api.admin.ProjectGroupAdmin.Meta attribute) (api.admin.ProjectMetricsAdmin attribute) (api.admin.VocabularyAdmin attribute) (api.serializers.AnnotatedEntitySerializer.Meta attribute) (api.serializers.ConceptDBSerializer.Meta attribute) (api.serializers.DatasetSerializer.Meta attribute) (api.serializers.DocumentSerializer.Meta attribute) (api.serializers.EntityRelationSerializer.Meta attribute) (api.serializers.EntitySerializer.Meta attribute) (api.serializers.MetaAnnotationSerializer.Meta attribute) (api.serializers.MetaCATModelSerializer.Meta attribute) (api.serializers.MetaTaskSerializer.Meta attribute) (api.serializers.MetaTaskValueSerializer.Meta attribute) (api.serializers.ModelPackSerializer.Meta attribute) (api.serializers.ProjectAnnotateEntitiesSerializer.Meta attribute) (api.serializers.ProjectGroupSerializer.Meta attribute) (api.serializers.RelationSerializer.Meta attribute) (api.serializers.UserSerializer.Meta attribute) (api.serializers.VocabularySerializer.Meta attribute) (api.views.AnnotatedEntityFilter.Meta attribute) (api.views.ProjectGroupFilter.Meta attribute) (api.views.RelationFilter.Meta attribute)

model_loaded() (in module api.views) model_pack (api.admin.ModelPack attribute), [1] (api.admin.ProjectAnnotateEntitiesFields attribute), [1] (api.models.ModelPack attribute) (api.models.ProjectAnnotateEntitiesFields attribute) model_service_url (api.admin.ProjectAnnotateEntitiesFields attribute), [1] (api.models.ProjectAnnotateEntitiesFields attribute) ModelPack (class in api.admin), [1] (class in api.models) modelpack_id (api.admin.ExportedProject attribute), [1] (api.models.ExportedProject attribute) ModelPackAdmin (class in api.admin) (class in api.admin.models) ModelPackSerializer (class in api.serializers) ModelPackSerializer.Meta (class in api.serializers) ModelPackViewSet (class in api.views) module api api.admin api.admin.actions api.admin.models api.apps api.data_utils api.metrics api.model_cache api.models api.oidc_utils api.permissions api.serializers api.signals api.solr_utils api.tests api.tests.test_data_utils api.urls api.utils api.views

N

name (api.admin.ConceptDB attribute), [1], [2] (api.admin.Dataset attribute), [1] (api.admin.Document attribute), [1], [2] (api.admin.MetaCATModel attribute), [1] (api.admin.MetaTask attribute), [1] (api.admin.MetaTaskValue attribute), [1] (api.admin.ModelPack attribute), [1] (api.admin.ProjectFields attribute), [1] (api.admin.Vocabulary attribute), [1] (api.apps.ApiConfig attribute) (api.models.ConceptDB attribute) (api.models.Dataset attribute) (api.models.Document attribute) (api.models.MetaCATModel attribute) (api.models.MetaTask attribute) (api.models.MetaTaskValue attribute) (api.models.ModelPack attribute) (api.models.ProjectFields attribute) (api.models.Vocabulary attribute)

NumInFilter (class in api.views)

O

ordering (api.admin.AnnotatedEntity.Meta attribute), [1], [2] (api.admin.Document.Meta attribute), [1], [2] (api.admin.EntityRelation.Meta attribute), [1], [2] (api.admin.MetaTask attribute), [1] (api.admin.MetaTask.Meta attribute), [1] (api.admin.MetaTaskValue attribute), [1] (api.admin.MetaTaskValue.Meta attribute), [1] (api.admin.Relation.Meta attribute), [1] (api.models.AnnotatedEntity.Meta attribute) (api.models.Document.Meta attribute) (api.models.EntityRelation.Meta attribute) (api.models.MetaTask attribute) (api.models.MetaTask.Meta attribute) (api.models.MetaTaskValue attribute) (api.models.MetaTaskValue.Meta attribute) (api.models.Relation.Meta attribute)

original_file (api.admin.Dataset attribute), [1] (api.models.Dataset attribute) (api.serializers.DatasetSerializer attribute)

P

perform_create() (api.views.ConceptDBViewSet method) permission_classes (api.views.AnnotatedEntityViewSet attribute) (api.views.ConceptDBViewSet attribute) (api.views.DatasetViewSet attribute) (api.views.DocumentViewSet attribute) (api.views.EntityRelationViewSet attribute) (api.views.EntityViewSet attribute) (api.views.MetaAnnotationViewSet attribute) (api.views.MetaTaskValueViewSet attribute) (api.views.MetaTaskViewSet attribute) (api.views.ModelPackViewSet attribute) (api.views.ProjectAnnotateEntitiesViewSet attribute) (api.views.ProjectGroupViewSet attribute) (api.views.RelationViewSet attribute) (api.views.UserViewSet attribute) (api.views.VocabularyViewSet attribute) post() (api.views.ResetPasswordView method), [1] pre_save_dataset() (in module api.signals) predicted_meta_task_value (api.admin.MetaAnnotation attribute), [1], [2] (api.models.MetaAnnotation attribute) prediction_model (api.admin.MetaTask attribute), [1] (api.models.MetaTask attribute) prep_docs() (in module api.utils) prepare_docs_bg_task() (in module api.views) prepare_docs_bg_tasks() (in module api.views) prepare_documents() (in module api.views) prepare_documents_bg() (in module api.views) prepared_documents (api.admin.Project attribute), [1] (api.models.Project attribute) project (api.admin.AnnotatedEntity attribute), [1], [2] (api.admin.EntityRelation attribute), [1], [2] (api.models.AnnotatedEntity attribute) (api.models.EntityRelation attribute) Project (class in api.admin), [1] (class in api.models) project_admin_clone() (in module api.views) project_admin_create() (in module api.views) project_admin_detail() (in module api.views) project_admin_projects() (in module api.views) project_admin_reset() (in module api.views)

project_locked (api.admin.ProjectFields attribute), [1] (api.models.ProjectFields attribute) project_progress() (in module api.views) project_status (api.admin.ProjectFields attribute), [1] (api.models.ProjectFields attribute) PROJECT_STATUSES (api.admin.ProjectFields attribute), [1] (api.models.ProjectFields attribute) project_tasks_changed() (in module api.signals) ProjectAnnotateEntities (class in api.admin), [1] (class in api.models) ProjectAnnotateEntitiesAdmin (class in api.admin) (class in api.admin.models) ProjectAnnotateEntitiesFields (class in api.admin), [1] (class in api.models) ProjectAnnotateEntitiesFields.Meta (class in api.admin), [1] (class in api.models) ProjectAnnotateEntitiesSerializer (class in api.serializers) ProjectAnnotateEntitiesSerializer.Meta (class in api.serializers) ProjectAnnotateEntitiesViewSet (class in api.views) ProjectFields (class in api.admin), [1] (class in api.models) ProjectFields.Meta (class in api.admin), [1] (class in api.models) ProjectGroup (class in api.admin), [1] (class in api.models) ProjectGroupAdmin (class in api.admin) (class in api.admin.models) ProjectGroupAdmin.Meta (class in api.admin) (class in api.admin.models) ProjectGroupFilter (class in api.views) ProjectGroupFilter.Meta (class in api.views) ProjectGroupSerializer (class in api.serializers) ProjectGroupSerializer.Meta (class in api.serializers) ProjectGroupViewSet (class in api.views) ProjectMetrics (class in api.admin), [1] (class in api.metrics) (class in api.models) ProjectMetricsAdmin (class in api.admin) (class in api.admin.models) projects (api.admin.ProjectMetrics attribute), [1] (api.models.ProjectMetrics attribute)

Q

queryset (api.views.AnnotatedEntityViewSet attribute) (api.views.ConceptDBViewSet attribute) (api.views.DatasetViewSet attribute) (api.views.DocumentViewSet attribute) (api.views.EntityRelationViewSet attribute) (api.views.EntityViewSet attribute) (api.views.MetaAnnotationViewSet attribute) (api.views.MetaTaskValueViewSet attribute) (api.views.MetaTaskViewSet attribute) (api.views.ModelPackViewSet attribute) (api.views.ProjectAnnotateEntitiesViewSet attribute) (api.views.ProjectGroupViewSet attribute) (api.views.RelationViewSet attribute) (api.views.UserViewSet attribute) (api.views.VocabularyViewSet attribute)

R

ready() (api.apps.ApiConfig method) relation (api.admin.EntityRelation attribute), [1], [2] (api.models.EntityRelation attribute) Relation (class in api.admin), [1] (class in api.models) Relation.Meta (class in api.admin), [1] (class in api.models) RelationFilter (class in api.views) RelationFilter.Meta (class in api.views) relations (api.admin.ProjectAnnotateEntitiesFields attribute), [1] (api.models.ProjectAnnotateEntitiesFields attribute) RelationSerializer (class in api.serializers) RelationSerializer.Meta (class in api.serializers) RelationViewSet (class in api.views) RemoteEntity (class in api.utils) RemoteSpacyDoc (class in api.utils) remove_all_documents() (in module api.admin), [1] (in module api.admin.actions) remove_annotations() (in module api.utils) remove_dataset_file() (in module api.signals) remove_metrics_job() (in module api.views)

remove_model_pack_assets() (in module api.signals) remove_model_pack_meta_cat_models() (in module api.signals) rename_meta_anns() (api.metrics.ProjectMetrics method) report (api.admin.ProjectMetrics attribute), [1] (api.models.ProjectMetrics attribute) report_name (api.admin.ProjectMetrics attribute), [1] (api.models.ProjectMetrics attribute) report_name_generated (api.admin.ProjectMetrics attribute), [1] (api.models.ProjectMetrics attribute) ReportErrorModelAdminMixin (class in api.admin) (class in api.admin.models) require_entity_validation (api.admin.ProjectAnnotateEntitiesFields attribute), [1] (api.models.ProjectAnnotateEntitiesFields attribute) reset_cdb_filters() (in module api.admin), [1] (in module api.admin.actions) reset_project() (in module api.admin), [1] (in module api.admin.actions) ResetPasswordView (class in api.views), [1] restrict_concept_lookup (api.admin.ProjectAnnotateEntitiesFields attribute), [1] (api.models.ProjectAnnotateEntitiesFields attribute) retrieve_project_data() (in module api.admin), [1] (in module api.admin.actions)

S

sanitise_input() (in module api.data_utils) save() (api.admin.AnnotatedEntity method), [1], [2] (api.admin.ConceptDB method), [1], [2] (api.admin.EntityRelation method), [1], [2] (api.admin.MetaAnnotation method), [1], [2] (api.admin.MetaCATModel method), [1] (api.admin.ModelPack method), [1] (api.admin.ProjectAnnotateEntitiesFields method), [1] (api.admin.Vocabulary method), [1] (api.models.AnnotatedEntity method) (api.models.ConceptDB method) (api.models.EntityRelation method) (api.models.MetaAnnotation method) (api.models.MetaCATModel method) (api.models.ModelPack method) (api.models.ProjectAnnotateEntitiesFields method) (api.models.Vocabulary method) save_dataset() (in module api.signals) save_exported_projects() (in module api.signals) save_model() (api.admin.ConceptDBAdmin method) (api.admin.ModelPackAdmin method) (api.admin.models.ConceptDBAdmin method) (api.admin.models.ModelPackAdmin method) (api.admin.models.ProjectGroupAdmin method) (api.admin.models.VocabularyAdmin method) (api.admin.ProjectGroupAdmin method) (api.admin.VocabularyAdmin method) save_models() (in module api.views) save_project_anno() (in module api.utils)

search_collection() (in module api.solr_utils) search_solr() (in module api.views) serializer_class (api.views.AnnotatedEntityViewSet attribute) (api.views.ConceptDBViewSet attribute) (api.views.DatasetViewSet attribute) (api.views.DocumentViewSet attribute) (api.views.EntityRelationViewSet attribute) (api.views.EntityViewSet attribute) (api.views.MetaAnnotationViewSet attribute) (api.views.MetaTaskValueViewSet attribute) (api.views.MetaTaskViewSet attribute) (api.views.ModelPackViewSet attribute) (api.views.ProjectAnnotateEntitiesViewSet attribute) (api.views.ProjectGroupViewSet attribute) (api.views.RelationViewSet attribute) (api.views.UserViewSet attribute) (api.views.VocabularyViewSet attribute) set_validated_docs (api.admin.ExportedProject attribute), [1] (api.models.ExportedProject attribute) setUp() (api.tests.test_data_utils.UploadProjectsExportTestCase method) SimpleFilters (class in api.utils) SOLR_INDEX_SCHEMA (in module api.solr_utils) start_entity (api.admin.EntityRelation attribute), [1], [2] (api.models.EntityRelation attribute) start_ind (api.admin.AnnotatedEntity attribute), [1], [2] (api.models.AnnotatedEntity attribute) STATUS_CHOICES (in module api.admin), [1] (in module api.models) subject_template_name (api.views.ResetPasswordView attribute), [1] submit_document() (in module api.views)

T

tasks (api.admin.ProjectAnnotateEntitiesFields attribute), [1] (api.models.ProjectAnnotateEntitiesFields attribute) terminate_available (api.admin.ProjectAnnotateEntitiesFields attribute), [1] (api.models.ProjectAnnotateEntitiesFields attribute) test_upload_projects_export_no_cdb_vocab_modelpack() (api.tests.test_data_utils.UploadProjectsExportTestCase method) test_upload_projects_export_skips_empty_projects() (api.tests.test_data_utils.UploadProjectsExportTestCase method) test_upload_projects_export_with_cdb_vocab() (api.tests.test_data_utils.UploadProjectsExportTestCase method) test_upload_projects_export_with_custom_suffix() (api.tests.test_data_utils.UploadProjectsExportTestCase method) test_upload_projects_export_with_members() (api.tests.test_data_utils.UploadProjectsExportTestCase method) test_upload_projects_export_with_modelpack() (api.tests.test_data_utils.UploadProjectsExportTestCase method) test_upload_projects_export_with_set_validated_docs() (api.tests.test_data_utils.UploadProjectsExportTestCase method)

test_upload_projects_export_with_unavailable_user() (api.tests.test_data_utils.UploadProjectsExportTestCase method) text (api.admin.Document attribute), [1], [2] (api.models.Document attribute) TextInFilter (class in api.views) to_representation() (api.serializers.ProjectAnnotateEntitiesSerializer method) (api.serializers.ProjectGroupSerializer method) train_medcat() (in module api.utils) train_model_on_submit (api.admin.ProjectAnnotateEntitiesFields attribute), [1] (api.models.ProjectAnnotateEntitiesFields attribute) trainer_export_file (api.admin.ExportedProject attribute), [1] (api.models.ExportedProject attribute)

U

update_meta_annotation() (in module api.views) upload_deployment() (in module api.views) upload_projects_export() (in module api.data_utils) UploadProjectsExportTestCase (class in api.tests.test_data_utils) urlpatterns (in module api.urls) use_for_training (api.admin.ConceptDB attribute), [1], [2] (api.models.ConceptDB attribute) use_model_service (api.admin.ProjectAnnotateEntitiesFields attribute), [1] (api.models.ProjectAnnotateEntitiesFields attribute)

user (api.admin.AnnotatedEntity attribute), [1], [2] (api.admin.EntityRelation attribute), [1], [2] (api.models.AnnotatedEntity attribute) (api.models.EntityRelation attribute) user_stats() (api.metrics.ProjectMetrics method) UserSerializer (class in api.serializers) UserSerializer.Meta (class in api.serializers) UserViewSet (class in api.views)

V

validated (api.admin.AnnotatedEntity attribute), [1], [2] (api.admin.EntityRelation attribute), [1], [2] (api.admin.MetaAnnotation attribute), [1], [2] (api.models.AnnotatedEntity attribute) (api.models.EntityRelation attribute) (api.models.MetaAnnotation attribute) validated_documents (api.admin.Project attribute), [1] (api.models.Project attribute) value (api.admin.AnnotatedEntity attribute), [1], [2] (api.models.AnnotatedEntity attribute) values (api.admin.MetaTask attribute), [1] (api.models.MetaTask attribute) version() (in module api.views) view_metrics() (in module api.views) vocab (api.admin.ModelPack attribute), [1] (api.admin.ProjectAnnotateEntitiesFields attribute), [1] (api.models.ModelPack attribute) (api.models.ProjectAnnotateEntitiesFields attribute)

vocab_file (api.admin.Vocabulary attribute), [1] (api.models.Vocabulary attribute) vocab_id (api.admin.ExportedProject attribute), [1] (api.models.ExportedProject attribute) VOCAB_MAP (in module api.model_cache) Vocabulary (class in api.admin), [1] (class in api.models) VocabularyAdmin (class in api.admin) (class in api.admin.models) VocabularySerializer (class in api.serializers) VocabularySerializer.Meta (class in api.serializers) VocabularyViewSet (class in api.views)